Presented a talk on Data-Driven methods for Analysis of Biological Datasets
Title : Data-Driven Methods for Analysis of Biological datasets <\b> Abstract: Data-driven dictionary learning based framework can be applied on a variety of signal analysis problems. Current methods based on analytical models do not adequately take the variability within and across datasets into consideration when designing signal analysis algorithms. This variability can be added as a morphological constraint to improve the signal analysis algorithms. In particular, this talk focuses on four different applications: 1) we present a method for large-scale automated three-dimensional (3-D) reconstruction and profiling of microglia populations in extended regions of brain tissue for quantifying arbor morphology; this work provided an opportunity to profile the distribution of microglia in the controlled and device implanted brain. 2) we present a novel morphological constrained spectral unmixing (MCSU) algorithm that combines the spectral and morphological cues in the multispectral image data cube to improve the unmixing quality, this work provided an opportunity to identify new therapeutic opportunities for pancreatic ductal adenocarcinoma (PDAC) from the images collected from humans; 3) we developed a framework to analyze neuronal response from electroencephalography (EEG) datasets acquired from the infants ranging from 6-24 months. We uncovered different spatial bio markers for understanding a human infant’s brain. These bio-markers can be used for developmental stages of infants and further analysis is required to study the clinical aspects of infant’s social and cognitive development; and finally 4) we present a feature extraction method using convolution dictionary learning to predict delayed cerebral ischemia (DCI) after subarachnoid hemorrhage using the data collected from Neuro Intensive Care Unit (NICU). This ongoing analysis will provide the neurointensivist with a DCI risk score for an early intervention.